Fairy shrimps (Crustacea, Anostraca) are specialized inhabitants of inland water bodies that periodically dry or freeze over. Here we report the first observation since 1997 of a member of this basal crustacean order in Belgium and the first sighting of the species Branchipus schaefferi Fischer, 1834 since 1930. Nineteen populations were found in a restricted area located 55 km SE of Brussels in the Province of Hainaut. Based on a field survey, we discuss the habitat characteristics of these populations. We discuss also the distribution and habitat requirements of the species based on literature and formulate a number of guidelines for the conservation of this species as well as other large branchiopods in densely settled areas with intensive agriculture such as Belgium. Finally, we formulate a number of likely explanations for the lack of recent observations of these organisms in Western Europe and in Belgium.